R Development Page
Contributed R Packages
Below is a list of all packages provided by project QuasiAlign: Efficient Sequence Analysis.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
BiostringsTools | Interface to Tools for Biostrings (alignment, classification, database) | |||||||||
Seamlessly interfaces several popular tools for sequence alignment (ClustalW, MAFFT, MUSCLE, Kalign), data base search (BLAST), classification (RDP) and a database to manage 16S rRNA sequences with Biostrings (from Bioconductor). The package includes a software installation wizard. This work is supported by grant no. R21HG005912 from the National Human Genome Research Institute. | ||||||||||
Version: 0.99.1 | Last change: 2015-03-26 18:27:56+01 | Rev.: 379 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("BiostringsTools", repos="http://R-Forge.R-project.org") | ||||||||||
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QuasiAlign | Infrastructure for Quasi-Alignment of Genetic Sequences | |||||||||||
Infrastructure for position sensitive p-mer frequency clustering for gene sequence analysis, quasi-alignment, comparison, and classification. This work is supported by grant no. R21HG005912 from the National Human Genome Research Institute. | ||||||||||||
Version: 0.0-5 | Last change: 2015-02-18 16:26:04+01 | Rev.: 378 | ||||||||||||
Download: (.tar.gz) | (.zip) | Build status: Failed to build | ||||||||||||
R install command:
install.packages("QuasiAlign", repos="http://R-Forge.R-project.org") | ||||||||||||
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rMSA | Interface to Popular Multiple Sequence Alignment Tools | |||||||||
rMSA is now maintained on github (http://github.com/mhahsler/rMSA) | ||||||||||
Version: 0.99.0 | Last change: 2015-10-07 05:08:30+02 | Rev.: 380 | ||||||||||
Download: (.tar.gz) | (.zip) | Build status: Current | ||||||||||
R install command:
install.packages("rMSA", repos="http://R-Forge.R-project.org") | ||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.