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BiostringsTools log file (check_x86_64_linux)

Thu Mar 26 18:45:32 2015: Checking package BiostringsTools (SVN revision 379) ...
* using log directory ‘/mnt/building/build_2015-03-26-18-43/RF_PKG_CHECK/PKGS/BiostringsTools.Rcheck’
* using R version 3.1.3 Patched (2015-03-16 r67994)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘BiostringsTools/DESCRIPTION’ ... OK
* this is package ‘BiostringsTools’ version ‘0.99.1’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Michael Hahsler ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiostringsTools’ can be installed ... [11s/11s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘Hierarchy.R’
  Comparing ‘Hierarchy.Rout’ to ‘Hierarchy.Rout.save’ ...19,24c19,24
<     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
<     as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
<     eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
<     mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
<     rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
<     unique, unlist, unsplit
---
>     anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
>     do.call, duplicated, eval, evalq, Filter, Find, get, intersect,
>     is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax,
>     pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int,
>     rownames, sapply, setdiff, sort, table, tapply, union, unique,
>     unlist, unsplit
 [5s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘BiostringsTools.Rnw’ ... [0s/0s] OK
 [0s/0s] OK
* checking re-building of vignette outputs ... [1s/2s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2015-03-26-18-43/RF_PKG_CHECK/PKGS/BiostringsTools.Rcheck/00check.log’
for details.

Run time: 160.03 seconds.