Software Map
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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
74 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4>
Rollply  Rollply is an addon to facilitate movingwindow computations. It is based on plyr, has a very similar syntax and takes advantage of its capacities (progress report, parallel computations, etc.).  
Tags: moving window, plyr, data.frame, C++, R, data, datasets  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20141028 16:05 
SciencesPo  Provide functions for analyzing political behavior data, including measures of political fragmentation, seat apportionment, and options for small data visualization.  
Tags: electoral systems, effective number of parties, anonymize, describe data, descriptive stats, political science, Bayesian, R, distributions  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130102 11:44 
StructureTime Diagram  The STdiag package is designed to provide efficient tools to simply plot a structuretime diagram to represent dynamics of a structured time series.  
Tags: Time series, structured data, population dynamics, structured population, Ecology, R, RForge, ecology, graphics, plotting, spatial, spatial data, spatiotemporal  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121025 13:03 
Testing HWE for Multiallelic Genes  This package calculates plain and fully conditional Pvalues for the rootmeansquare statistic, chisquare statistic, and log likelihoodratio statistic for the userprovided genotype counts to be consistent with the HardyWeinberg equilibrium model.  
Tags: Bioinformatics, R, RForge, biostatistics, likelihood, model comparison  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120703 03:50 
The DataRobot R package  The DataRobot R package is an API for the DataRobot modeling engine, which fits a large, diverse collection of prediction models to a dataset. This API allows the user to build models, retrieve key characteristics, and generate predictions from new data.  
Tags: API, DataRobot, R, machine learning, modeling, prediction, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150526 15:13 
Useful functions not found elsewhere  A collection of more or less useful functions not found in default R or anywhere else  
Tags: R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130705 23:37 
XMLSchemaHelper  XML Schema reading package which reads simple schema documents and returns details of userspecified elements.  
Tags: XML, schema, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120627 15:15 
abernethy reliability methods  Activity on this project has been suspended in favor of the WeibullR project https://rforge.rproject.org/R/?group_id=2252  
Tags: Reliability, C++, R, Regression, Weibull, competing risks models, distribution diagnostics, likelihood, lognormal, optimization, parametric model, quantile regression, regression, sampling, survival, visualization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121230 16:40 
addendum  Utility functions that should have been in R: easy glmnet, pretty graphing and swift debugging and profiling.  
Tags: Bayesian, Multivariate Regression, R, likelihood, marginal model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110617 13:35 
audited  Classifies a data.frame such that row deletions and additions are tracked. Used for reporting to auditing agencies, such as the FDA.  
Tags: reproducible, pharmacometrics, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150105 14:59 
cbrAPI  Allows to download and read dbffiles with different forms of accounting reports (101, 102, 123, 134, 135) for a certain time period, as well as find information about the banks on Central Bank of Russia site  
Tags: R, Economics, Finance, Accounting reports, Banks, Russia, Central Bank of Russia  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150512 19:49 
cccp  The purpose of this package is the provision of routines for solving cone constrained convex problems. The inequality constraints can be formulated with respect to the nonnegative orthant, the secondorder and/or the positive semidefinite cone(s).  
Tags: R, linear programming, optimization, quadratic programming, semidefinite programming  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140505 13:16 
covert R Package  The covert R package handles condensed and overlapped plotting of genomic data tracks.  
Tags: R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140110 17:17 
ecospat  Miscellaneous methods and utilities for spatial ecology analysis, written by current and former members and collaborators of the ecospat group of Antoine Guisan, University of Lausanne, Switzerland.  
Tags: Ecological niche modeling, Ecology, R  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140725 13:13 
flip: Multivariate Permutation Tests  A collection of Univariate and multivariate (i.e. overall and multiplicity control) permutation and rotation tests. dev page at https://github.com/livioivil/flip  
Tags: ANOVA, Multiple Comparisons, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, R, RForge, biostatistics, bivariate, bivariate analysis, categorical, conditional inference, high dimentional data, missing, missing data, missing values, mixed model, mixture model, mixture modelling, multi, multidimensions, multivariate, multivariate regression, multivariate statistics, nonparametric, nonparametric anova, permutation test, permutation tests, statistical inference  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131016 19:04 
fuzzySim  fuzzySim is an R package for calculating fuzzy similarity in species occurrence patterns.  
Tags: R, similarity, species distributions, spatial, ecology, binary data, fuzzy, fuzzy sets, fuzzy logic, classification, clustering, favourability model, trend surface analysis, FDR, VIF  

Activity Percentile: 53 Activity Ranking: 19 Registered: 20140227 18:53 
geneNetBP  The geneNetBP package implements methods to predict, quantify and visualize systemwide changes in beliefs after absorbing evidence in genotypephenotype networks inferred from eQTL data.  
Tags: Bayesian network, Bioinformatics & Biostatistics, Causal effects, Gene Expression, R, Visualization  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20151116 19:01 
gregmisc  Packages for plotting (gplots), data manupulation (gdata), modeling (gmodels), and programming tools (gtools), creation and management of subprocesses (fork), determing sample sizes for omics experiments (ssize), and a variety of other tasks.  
Tags: ANOVA, R, SAS, Visualization, biostatistics, categorical, density estimation, plotting, power calculation, sample size calculation, tables  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150204 01:18 
highriskzone  The highriskzonepackage provides tools to determine and evaluate highrisk zones of unobserved events using point process methodology.  
Tags: R, spatial, spatial point patterns, stochastic processes  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121212 08:41 
74 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4>