Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
10 projects in result set.
Coalescent for compartmental models  This package provides methods to compute the likelihood of a gene genealogy using coalescent models for populations with complex demographic histories.  
Tags: population genetics, epidemiology, infectious disease, Bioinformatics, Ecology, Genetics, Phylogeny  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130109 23:07 
Evolutionary Biology in R  Active development of this and my other package has been migrated to github http://coleoguy.github.io/software.html  
Tags: Bioinformatics, Genetics, Phylogeny, Regression, data mining, education, educational tool, genetics, genomic, phylogeny, population genetics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131011 20:03 
Evolutionary models in R  Evolutionary models in R.  
Tags: Bioinformatics, Phylogeny, sequence analysis  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20110508 21:37 
Jackknife in phylogenetic diversity  A package to calculate the taxonomic measures presented in Posadas et al 2001 and in MirandaEsquivel 2014 (in press)  
Tags: Conservation, Phylogeny  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140924 05:20 
PhyloOrchard  This holds noteworthy chronograms. It serves as the tree store for the DateLife.org project but is available for anyone to use.  
Tags: Phylogeny, datasets, phylogeny  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110917 01:58 
phangorn  phangorn: Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)  
Tags: Bioinformatics, Phylogeny  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20121009 16:14 
phylobase  Defining the basic S4 classes and methods for representing and manipulating phylogenetic trees and data in R.  
Tags: C++, Phylogeny  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20071214 19:17 
plantlist: Looking Up Plant Families  Looking up Families and checking Synonyms for Plants  
Tags: ecology, Phylogeny, phylogenetic diversity, phylogeny, environmetrics, Conservation, Ecological monitoring, Evolution, biodiversity, bioinformatics, Ecology, Forestry, taxonomic diversity  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 70 Activity Ranking: 12 Registered: 20150320 06:26 
rexpokit  R wrapper for EXPOKIT, a FORTRAN library which allows fast exponentiation of dense and sparse matrices  
Tags: matrix manipulation, Phylogeny, multivariate, spatial econometrics, survival  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120619 23:30 
species delimitation in oysters  The aim of this project is to make clear oyster phylogeny and systematics using both the MrBayes and the BEAST/GMYC analyses based on multigene sequence data.  
Tags: Bayesian, Animal, Classification, Sequence analysis, Phylogeny, Tree  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120502 12:23 