Software Map
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7 projects in result set.
Finite Mixure of AFT and FMR models  FMRS package provides estimation and variable selection in Finite Mixture of Accelerated Failure Time Regression (FMAFTR) and Finite Mixture of Regression (FMR) models with a large number of covariates and/or right censoring and heterogeneous structure.  
Tags: Bioinformatics, Biostatistics, C++, Cancer, Medical Science, Mixture, Next generation Sequencing, R, Regression, Statistics, lasso, model estimation, model selection, penalized regression, regularization, survival, tuning parameters, variable selection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20160307 02:31 
HTDA (High Throughput Data Analysis)  A generic platform for the analysis of high throughput transcriptomics, proteomics and metabolomics data.  
Tags: Bioinformatics, Differential expression analysis, Multivariate Analysis, Next generation Sequencing, RNAseq  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130628 11:59 
HTSAnalysis  This project contains R packages for the statistical analysis of high throughput sequencing data.  
Tags: Filter, RNAseq, Differential expression analysis, Bioinformatics, Next generation Sequencing, gene expression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121016 20:41 
Quantify RNASeq data  The package can read alignment BAM file from RNAseq and gene annotation from genomic databases directly to quantify the gene abundances in different levels.  
Tags: Next generation Sequencing, Bioinformatics  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120509 18:25 
WaveSeqR  Public repository of Rpackage WaveSeqR which implements the ChIPSeq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.  
Tags: chipseq, peakcalling, Bioinformatics, Next generation Sequencing, biostatistics, wavelet  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20131121 21:46 
casper  casper infers alternative splicing from highthroughput sequencing data both for known variants and de novo discovery. We use a Bayesian model with few assumptions, and modern model selection ideas with improved theoretical and computational properties.  
Tags: Differential expression analysis, Next generation Sequencing, RNAseq, Secondgeneration Sequencing  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111011 08:51 
patternCNV  patternCNV is a versatile tool to facilitate CNV detection and interpretation from either Germline or Tumor/Normal pairs of Exomeseq samples.  
Tags: Next generation Sequencing, R, RForge, quality control in science  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140103 19:01 