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5 projects in result set.
Breakpoint detection error  Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.  
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:51 
Fast kernel changepoint procedure  This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple changepoint detection with kernels (A. Celisse, G. Marot, M. PierreJean, G. Rigaill) available at https://arxiv.org/abs/1710.04556  
Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 18 Activity Ranking: 34 Registered: 20171218 14:11 
Piet  This package provides some segmentation tools, using fused lasso, group fused lasso and generalized fused lasso (GFL), for analysis of individual or multiple sequences of CNV data.  
Tags: Copy number variant, CNV, fused lasso, group fused lasso, MM algorithm  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120312 12:11 
SegAnnot  SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.  
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:58 
plumbCNV: [see github: nicholasjcooper]  It has been shown that a comprehensive quality control battery for LogRRatio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline.  
Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130207 14:22 