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Forum: biomod2 package is now available !

Posted by: damien georges
Date: 2012-07-26 13:56
Summary: biomod2 package is now available !
Project: BioMod

Content:

Dear BIOMOD-users,

You were eagerly waiting for it, and we are happy to say that the new version of BIOMOD called biomod2 is now online on R-Forge.

Although we kept the same modelling philosophy than the former version (which we will still maintain for a while), we have made crucial changes. biomod2 is now fully object-oriented and made for running on a single species only (see vignette MultiSpeciesModelling for multi-species modelling at once). For advanced BIOMOD users, the new functions might be a bit disturbing at the beginning. Then, you will see that this new version is much more advanced and practical than the former ones. Among the novelties, the addition of MAXENT in the modelling techniques, a large range of evaluation metrics, a more refined definition of ensemble modelling and ensemble forecasting, the possibility to give presence-only data and environmental rasters to biomod2 and let it extract pseudo-absence data directly.

We have created several vignettes for you to get use to this new version and a figure explaining the different ways of giving data to BIOMOD.

Please bear in mind that R-Forge is a development platform, it means that this new package would experience repeated updating the next couple of weeks (correcting bugs, adding documentation, adding functionalities) so think about updating the package before each new study you will do.

Last but not least, all comments are welcome! If you find a bug, if you think some documentation points are unclear, if you think about new functionalities that may be useful, just let us know ASAP.

We count on you to help finalizing this new version to a very nice tool. We will then release it to CRAN by the end of July. Please remember to add your code, R-version, OS and BIOMOD-version every time you report a bug or a mistake in the vignette or help files.

Hoping you will enjoy this new version of BIOMOD.

With our best wishes,

Damien & Wilfried

Latest News

biomod2 is now devel on github

damien georges - 2020-03-02 17:08 -

biomod2 package is now available !

damien georges - 2012-07-26 13:56 -
...

 

Monitor Forum | Start New Thread Start New Thread
Topic Topic Starter Replies Last Post
Training DataLuís Santiago02022-04-29 17:07
ERROR using evaluation dataRicardo Alvarez82021-11-04 15:06
Error: EVAL$sensitivityRicardo Alvarez22021-05-20 02:36
biomod2 VignettesJordan Seider02020-12-17 20:04
Error in file(file, "rt") : cannot open the connectionOlef Koch02020-07-27 09:48
BIOMOD_Projection: Predictions not covering full extent of area Monique Laubscher52020-06-29 17:08
Warning message about convergence after running GAM modelFloor Maters12020-06-19 13:53
Error in validObject(.Object) : invalid class “MARS_biomod2_model” object: FALSEJustin Barker62020-04-06 16:26
model evaluation (AUC) for presence only dataRicardo Alvarez12019-02-26 15:34
BIOMOD_presenceonly FunctionEster Polaina22019-02-14 08:10
Error in gzfile(file, "wb") : cannot open the connectionJoana Carvalho22018-12-07 11:22
Problem when running Maxent in biomod2 setting backgroundCecilia Passadore12018-12-07 10:42
Error when building TSS binaries with biomod2Kostas Kougioumoutzis12018-06-14 15:25
extract Residuals Salomé Fabri-Ruiz02018-02-25 18:02
ResidualsSalomé Fabri-Ruiz02018-02-25 17:42
BIOMOD-tuning with pseudo-absencesJavier Fajardo02018-02-21 22:44
Screening variables for correlationNikhail Arumoogum12018-01-17 13:57
Binary methodsPedro Eisenlohr32017-11-20 12:38
modelling with explanatory variables as data frame and only presence dataRicardo Alvarez32017-11-20 10:30
Binary maps (TSS threshold)Pedro Eisenlohr62017-09-27 22:37
Response plots output from biomod2Andrew Bladon32017-09-11 08:13
Chosing treasholdCamila Neder12017-08-30 14:49
Specificity percentage for presence-only dataLauren Fuller42017-03-22 09:23
SWD background MAXENTMarta TobMor12016-10-19 10:17
get_variables_importance questionRicardo Alvarez52016-08-19 07:40
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