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RHmm log file (00install.out)
* installing *source* package ‘RHmm’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Debian 12.2.0-14) 12.2.0’
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c Kmeans.cpp -o Kmeans.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c LogProb.cpp -o LogProb.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c Main.cpp -o Main.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c MultivariateNormalUtil.cpp -o MultivariateNormalUtil.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c RHmm.cpp -o RHmm.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c SamplesUtil.cpp -o SamplesUtil.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c StatUtil.cpp -o StatUtil.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c StdAfxRHmm.cpp -o StdAfxRHmm.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cBaumWelch.cpp -o cBaumWelch.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cBaumWelchInParam.cpp -o cBaumWelchInParam.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cDMatrix.cpp -o cDMatrix.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cDVector.cpp -o cDVector.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cDerivative.cpp -o cDerivative.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cDiscrete.cpp -o cDiscrete.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cHmm.cpp -o cHmm.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cHmmFit.cpp -o cHmmFit.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cInParam.cpp -o cInParam.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cLogBaumWelch.cpp -o cLogBaumWelch.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cMixtMultivariateNormal.cpp -o cMixtMultivariateNormal.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cMixtUnivariateNormal.cpp -o cMixtUnivariateNormal.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cMultivariateNormal.cpp -o cMultivariateNormal.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cOTError.cpp -o cOTError.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cRUtils.cpp -o cRUtils.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cUnivariateNormal.cpp -o cUnivariateNormal.o
g++ -std=gnu++17 -I"/srv/R/R-patched/build.24-01-30/include" -DNDEBUG -I/usr/local/include -w -D_RDLL_ -fpic -g -O2 -c cViterbi.cpp -o cViterbi.o
g++ -std=gnu++17 -shared -L/srv/R/R-patched/build.24-01-30/lib -L/usr/local/lib -o RHmm.so Kmeans.o LogProb.o Main.o MultivariateNormalUtil.o RHmm.o SamplesUtil.o StatUtil.o StdAfxRHmm.o cBaumWelch.o cBaumWelchInParam.o cDMatrix.o cDVector.o cDerivative.o cDiscrete.o cHmm.o cHmmFit.o cInParam.o cLogBaumWelch.o cMixtMultivariateNormal.o cMixtUnivariateNormal.o cMultivariateNormal.o cOTError.o cRUtils.o cUnivariateNormal.o cViterbi.o -L/srv/R/R-patched/build.24-01-30/lib -lRlapack -L/srv/R/R-patched/build.24-01-30/lib -lRblas -lgfortran -lm -lquadmath -L/srv/R/R-patched/build.24-01-30/lib -lR
installing to /srv/rf/building/build_2024-01-31-09-24/RF_PKG_CHECK/PKGS/RHmm.Rcheck/00LOCK-RHmm/00new/RHmm/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RHmm)
