R Development Page

asuR log file (check_x86_64_linux)

Tue Nov 19 11:50:10 2019: Checking package asuR (SVN revision 22) ...
* using log directory ‘/srv/rf/building/build_2019-11-19-11-46/RF_PKG_CHECK/PKGS/asuR.Rcheck’
* using R version 3.6.1 Patched (2019-11-18 r77436)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘asuR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘asuR’ version ‘0.17’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Thomas Fabbro ’

New submission

Package was archived on CRAN

The Title field should be in title case. Current version is:
‘Advanced statistics using R’
In title case that is:
‘Advanced Statistics using R’

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘asuR’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘MASS’ ‘grid’ ‘lattice’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] NOTE
dep: no visible global function definition for ‘predict’
dep: no visible global function definition for ‘residuals’
dep: no visible global function definition for ‘xyplot’
dep: no visible global function definition for ‘trellis.currentLayout’
hnp.glm: no visible global function definition for ‘rstudent’
hnp.glm: no visible global function definition for ‘qnorm’
hnp.glm: no visible global function definition for ‘xyplot’
hnp.glm : myPanel: no visible global function definition for
  ‘panel.xyplot’
hnp.glm : myPanel: no visible global function definition for
  ‘panel.loess’
hnp.glm: no visible global function definition for
  ‘trellis.currentLayout’
identifyControl: no visible global function definition for
  ‘trellis.focus’
identifyControl: no visible global function definition for
  ‘panel.identify’
ihp: no visible global function definition for ‘rstudent’
ihp: no visible global function definition for ‘model.matrix’
ihp: no visible global function definition for ‘hat’
ihp: no visible global function definition for ‘xyplot’
ihp : myPanel: no visible global function definition for ‘panel.xyplot’
ihp : myPanel: no visible global function definition for ‘panel.loess’
ihp: no visible global function definition for ‘trellis.currentLayout’
ilp: no visible global function definition for ‘hat’
ilp: no visible global function definition for ‘model.matrix’
ilp: no visible global function definition for ‘xyplot’
ilp : myPanel: no visible global function definition for ‘panel.xyplot’
ilp : myPanel: no visible global function definition for ‘panel.loess’
ilp: no visible global function definition for ‘trellis.currentLayout’
inspect.glm: no visible global function definition for ‘new’
inspect.lm: no visible global function definition for ‘rstudent’
inspect.lm: no visible global function definition for ‘new’
irp: no visible global function definition for ‘rstudent’
irp: no visible global function definition for ‘xyplot’
irp : myPanel: no visible global function definition for ‘panel.xyplot’
irp : myPanel: no visible global function definition for ‘panel.abline’
irp : myPanel: no visible global function definition for ‘panel.loess’
irp: no visible global function definition for ‘trellis.currentLayout’
irp: no visible global function definition for ‘model.matrix’
lep.glm: no visible global function definition for ‘predict’
lep.glm: no visible global function definition for ‘xyplot’
lep.glm: no visible global function definition for
  ‘trellis.currentLayout’
mancontr: no visible global function definition for ‘ginv’
mycontr: no visible global function definition for ‘ginv’
norm.test: no visible global function definition for ‘rstudent’
norm.test: no visible global function definition for ‘rnorm’
norm.test: no visible global function definition for ‘par’
norm.test: no visible global function definition for ‘pushViewport’
norm.test: no visible global function definition for ‘viewport’
norm.test: no visible global function definition for ‘qnorm’
norm.test: no visible global function definition for ‘plot’
norm.test: no visible global function definition for ‘lines’
norm.test: no visible global function definition for ‘loess’
norm.test: no visible global function definition for ‘abline’
norm.test: no visible global function definition for ‘text’
norm.test: no visible global function definition for ‘points’
norm.test: no visible global function definition for ‘mtext’
parseFormula.glm: no visible global function definition for ‘formula’
parseFormula.glm: no visible global function definition for ‘new’
parseFormula.lm: no visible global function definition for ‘formula’
parseFormula.lm: no visible global function definition for ‘new’
prp: no visible global function definition for ‘rstudent’
prp: no visible global function definition for ‘model.matrix’
prp: no visible global function definition for ‘hat’
prp: no visible global function definition for ‘xyplot’
prp : : no visible global function definition for
  ‘panel.xyplot’
prp : : no visible global function definition for
  ‘grid.lines’
prp : : no visible global function definition for ‘unit’
prp: no visible global function definition for ‘trellis.currentLayout’
rpp.lm: no visible global function definition for ‘rstudent’
rpp.lm: no visible global function definition for ‘xyplot’
rpp.lm : myPanel: no visible global function definition for
  ‘panel.xyplot’
rpp.lm : myPanel: no visible global function definition for
  ‘panel.abline’
rpp.lm : myPanel: no visible global function definition for
  ‘panel.loess’
rpp.lm: no visible global function definition for
  ‘trellis.currentLayout’
ryp: no visible global function definition for ‘rstudent’
ryp: no visible global function definition for ‘predict’
ryp: no visible global function definition for ‘xyplot’
ryp : : no visible global function definition for
  ‘panel.xyplot’
ryp : : no visible global function definition for
  ‘panel.abline’
ryp : : no visible global function definition for
  ‘panel.loess’
ryp: no visible global function definition for ‘trellis.currentLayout’
ryp: no visible global function definition for ‘model.matrix’
workhorse: no visible global function definition for ‘menu’
[,Formula: no visible global function definition for ‘slot’
hnp,glm: no visible global function definition for ‘rstudent’
hnp,glm: no visible global function definition for ‘qnorm’
hnp,glm: no visible global function definition for ‘xyplot’
hnp,glm : myPanel: no visible global function definition for
  ‘panel.xyplot’
hnp,glm : myPanel: no visible global function definition for
  ‘panel.loess’
hnp,glm: no visible global function definition for
  ‘trellis.currentLayout’
inspect,glm: no visible global function definition for ‘new’
inspect,lm: no visible global function definition for ‘rstudent’
inspect,lm: no visible global function definition for ‘new’
lep,glm: no visible global function definition for ‘predict’
lep,glm: no visible global function definition for ‘xyplot’
lep,glm: no visible global function definition for
  ‘trellis.currentLayout’
parseFormula,glm: no visible global function definition for ‘formula’
parseFormula,glm: no visible global function definition for ‘new’
parseFormula,lm: no visible global function definition for ‘formula’
parseFormula,lm: no visible global function definition for ‘new’
rpp,lm: no visible global function definition for ‘rstudent’
rpp,lm: no visible global function definition for ‘xyplot’
rpp,lm : myPanel: no visible global function definition for
  ‘panel.xyplot’
rpp,lm : myPanel: no visible global function definition for
  ‘panel.abline’
rpp,lm : myPanel: no visible global function definition for
  ‘panel.loess’
rpp,lm: no visible global function definition for
  ‘trellis.currentLayout’
Undefined global functions or variables:
  abline formula ginv grid.lines hat lines loess menu model.matrix
  mtext new panel.abline panel.identify panel.loess panel.xyplot par
  plot points predict pushViewport qnorm residuals rnorm rstudent slot
  text trellis.currentLayout trellis.focus unit viewport xyplot
Consider adding
  importFrom("graphics", "abline", "lines", "mtext", "par", "plot",
             "points", "text")
  importFrom("methods", "new", "slot")
  importFrom("stats", "formula", "hat", "loess", "model.matrix",
             "predict", "qnorm", "residuals", "rnorm", "rstudent")
  importFrom("utils", "menu")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'unemployment.Rd':
  \examples lines wider than 100 characters:
     u.glm <- glm(success~gender, data=unemployment, family=binomial, contrasts=list(gender=mycontr(contrast.matrix)))
     unemployment.grouped <- data.frame(longterm=c(167,175), shortterm=c(403,238), gender=c("male","female"))
     u.glm.grouped <- glm(cbind(longterm,shortterm) ~ gender, data=unemployment.grouped, family=binomial, contrasts=list(gender=mycontr(cont ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 4 NOTEs
See
  ‘/srv/rf/building/build_2019-11-19-11-46/RF_PKG_CHECK/PKGS/asuR.Rcheck/00check.log’
for details.


Run time: 47.75 seconds.