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lsmeans log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-05-20-16-03/RF_PKG_CHECK/PKGS/lsmeans.Rcheck'
* using R version 3.0.1 Patched (2013-05-16 r62757)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'lsmeans/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lsmeans' version '2.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Maria del Carmen Romero '
New maintainer:
  Maria del Carmen Romero 
Old maintainer(s):
  Russ Lenth 
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lsmeans' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
contrastLC: no visible global function definition for ':='
contrastLC: missing arguments not allowed in calls to 'list'
* checking Rd files ... NOTE
prepare_Rd: CalculateMatrixofMeansAndStandardErrors.Rd:35-37: Dropping empty section \details
prepare_Rd: CalculateMatrixofMeansAndStandardErrors.Rd:49-51: Dropping empty section \note
prepare_Rd: CalculateMatrixofMeansAndStandardErrors.Rd:43-45: Dropping empty section \references
prepare_Rd: CalculateMmatrix.Rd:20-22: Dropping empty section \details
prepare_Rd: CalculateMmatrix.Rd:37-39: Dropping empty section \note
prepare_Rd: CalculateMmatrix.Rd:31-33: Dropping empty section \references
prepare_Rd: CalculateMmatrix.Rd:43-46: Dropping empty section \seealso
prepare_Rd: MeanAndVariance.Rd:35-37: Dropping empty section \details
prepare_Rd: MeanAndVariance.Rd:49-51: Dropping empty section \note
prepare_Rd: MeanAndVariance.Rd:43-45: Dropping empty section \references
prepare_Rd: MeanAndVariance.Rd:55-57: Dropping empty section \seealso
prepare_Rd: MeansComparison.Rd:46-48: Dropping empty section \details
prepare_Rd: MeansComparison.Rd:58-60: Dropping empty section \note
prepare_Rd: MeansComparison.Rd:52-54: Dropping empty section \references
prepare_Rd: MeansComparison.Rd:64-66: Dropping empty section \seealso
prepare_Rd: RSquare.Rd:21-23: Dropping empty section \details
prepare_Rd: RSquare.Rd:35-37: Dropping empty section \note
prepare_Rd: RSquare.Rd:29-31: Dropping empty section \references
prepare_Rd: RSquare.Rd:41-43: Dropping empty section \seealso
prepare_Rd: contrastLC.Rd:36-38: Dropping empty section \note
prepare_Rd: contrastLC.Rd:30-32: Dropping empty section \references
prepare_Rd: contrastLC.Rd:42-44: Dropping empty section \seealso
prepare_Rd: lsmeans-package.Rd:30-32: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'R:/run/building/build_2013-05-20-16-03/RF_PKG_CHECK/PKGS/lsmeans.Rcheck/00_pkg_src/lsmeans/man/lsmeans-package.Rd':
  'Test_Contrast'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'AvgSEMeansDiff_and_AvgDMS'
  'FindGreatestDFForAGivenListOfMeansForA_lme_model'
  'Linear.combination.to.estimate.a.mean' 'RebuildFactorLevels'
  'RebuildTreatmentNames' 'ReduceModel'
  'SearchForASubstringInAListOfStrings'
  'SearchForASubstringInAListOfStringsWithSeparators'
  'SearchForASubstringInAStringWithSeparators' 'Test_Contrast'
  'TheModelCoefficients' 'TheModelCoefficientsCovar' 'TheModelTerms'
  'UpdateFormula' 'checklinearindependence' 'dfMixedModelTypeIAnova'
  'validCases'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There were 3 notes.
See
  'R:/run/building/build_2013-05-20-16-03/RF_PKG_CHECK/PKGS/lsmeans.Rcheck/00check.log'
for details.

Run time: 98.78 seconds.