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PredictABEL log file (check_x86_64_linux)

Fri Sep 13 07:35:19 2013: Checking package PredictABEL (SVN revision 1332) ...
* using log directory ‘/mnt/building/build_2013-09-06-20-03/RF_PKG_CHECK/PKGS/PredictABEL.Rcheck’
* using R version 3.0.1 Patched (2013-08-27 r63742)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘PredictABEL/DESCRIPTION’ ... OK
* this is package ‘PredictABEL’ version ‘1.2-2’
* checking CRAN incoming feasibility ... OK
Maintainer: ‘Suman Kundu ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PredictABEL’ can be installed ... [2s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
simulatedDataset : func.data: warning in sample(c(Gene, rep(0,
  Filler)), s, rep = FALSE): partial argument match of 'rep' to
  'replace'
ExampleModels: no visible binding for global variable ‘ExampleData’

Found the following calls to data() loading into the global environment:
File ‘PredictABEL/R/PredictABEL.R’:
  data(ExampleData)
See section ‘Good practice’ in ‘?data’.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘evalCall’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [14s/22s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/mnt/building/build_2013-09-06-20-03/RF_PKG_CHECK/PKGS/PredictABEL.Rcheck/00check.log’
for details.

Run time: 88.58 seconds.