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intReg log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2016-08-21-21-43/RF_PKG_CHECK/PKGS/intReg.Rcheck'
* using R version 3.3.1 Patched (2016-08-19 r71123)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'intReg/DESCRIPTION' ... OK
* this is package 'intReg' version '0.2-9'
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Ott Toomet '
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'intReg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'general.R'
  Comparing 'general.Rout' to 'general.Rout.save' ...99,101c99,100
< stdEr.intReg..
< (Intercept)     sexmale log(income)         
<      1.1474      0.7294      0.4191          NA 
---
> (Intercept)     sexmale log(income)       sigma 
>      1.1474      0.7294      0.4191      0.4426 
107,109c106,119
< stdEr.intReg..
< (Intercept)     sexmale log(income)       sigma 
<      1.1474      0.7294      0.4191      0.4426 
---
> (Intercept)     sexmale log(income)         L 1         U 1         L 2 
>      1.1474      0.7294      0.4191      0.0000      0.0000      0.0000 
>         U 2         L 3         U 3         L 4         U 4         L 5 
>      0.0000      0.0000      0.0000      0.0000      0.0000      0.0000 
>         U 5         L 6         U 6         L 7         U 7         L 8 
>      0.0000      0.0000      0.0000      0.0000      0.0000      0.0000 
>         U 8         L 9         U 9        L 10        U 10        L 11 
>      0.0000      0.0000      0.0000      0.0000      0.0000      0.0000 
>        U 11        L 12        U 12        L 13        U 13        L 14 
>      0.0000      0.0000      0.0000      0.0000      0.0000      0.0000 
>        U 14        L 15        U 15        L 16        U 16        L 17 
>      0.0000      0.0000      0.0000      0.0000      0.0000      0.0000 
>        U 17       sigma 
>      0.0000      0.4426 
115d124
< stdEr.intReg..
127c136
< sigma          2.736         NA      NA       NA   
---
> sigma          2.736      0.443    6.18  1.5e-08 ***
131,135d139
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
<   longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object,  :
<   number of rows of result is not a multiple of vector length (arg 2)
139d142
< stdEr.intReg..
148,185c151,188
< (Intercept)    3.694      1.147    3.22  0.00175 ** 
< sexmale       -1.066      0.729   -1.46  0.14722    
< log(income)    0.354      0.419    0.85  0.40017    
< L 1             -Inf      0.443    -Inf  < 2e-16 ***
< U 1            0.693      1.147    0.60  0.54720    
< L 2             -Inf      0.729    -Inf  < 2e-16 ***
< U 2            1.609      0.419    3.84  0.00022 ***
< L 3             -Inf      0.443    -Inf  < 2e-16 ***
< U 3            2.996      1.147    2.61  0.01048 *  
< L 4             -Inf      0.729    -Inf  < 2e-16 ***
< U 4            3.912      0.419    9.33  4.0e-15 ***
< L 5            1.609      0.443    3.64  0.00045 ***
< U 5            1.609      1.147    1.40  0.16394    
< L 6            1.609      0.729    2.21  0.02973 *  
< U 6            2.996      0.419    7.15  1.7e-10 ***
< L 7            2.996      0.443    6.77  1.0e-09 ***
< U 7            2.996      1.147    2.61  0.01048 *  
< L 8            2.996      0.729    4.11  8.4e-05 ***
< U 8            3.912      0.419    9.33  4.0e-15 ***
< L 9            2.996      0.443    6.77  1.0e-09 ***
< U 9              Inf      1.147     Inf  < 2e-16 ***
< L 10           3.912      0.729    5.36  5.6e-07 ***
< U 10           3.912      0.419    9.33  4.0e-15 ***
< L 11           3.912      0.443    8.84  4.7e-14 ***
< U 11           4.605      1.147    4.01  0.00012 ***
< L 12           3.912      0.729    5.36  5.6e-07 ***
< U 12             Inf      0.419     Inf  < 2e-16 ***
< L 13           4.605      0.443   10.40  < 2e-16 ***
< U 13           4.605      1.147    4.01  0.00012 ***
< L 14           4.605      0.729    6.31  8.4e-09 ***
< U 14           5.521      0.419   13.18  < 2e-16 ***
< L 15           4.605      0.443   10.40  < 2e-16 ***
< U 15             Inf      1.147     Inf  < 2e-16 ***
< L 16           5.521      0.729    7.57  2.3e-11 ***
< U 16           5.521      0.419   13.18  < 2e-16 ***
< L 17           5.521      0.443   12.47  < 2e-16 ***
< U 17             Inf      1.147     Inf  < 2e-16 ***
< sigma          2.736      0.729    3.75  0.00030 ***
---
> (Intercept)    3.694      1.147    3.22   0.0018 ** 
> sexmale       -1.066      0.729   -1.46   0.1472    
> log(income)    0.354      0.419    0.85   0.4002    
> L 1             -Inf      0.000    -Inf  < 2e-16 ***
> U 1            0.693      0.000     Inf  < 2e-16 ***
> L 2             -Inf      0.000    -Inf  < 2e-16 ***
> U 2            1.609      0.000     Inf  < 2e-16 ***
> L 3             -Inf      0.000    -Inf  < 2e-16 ***
> U 3            2.996      0.000     Inf  < 2e-16 ***
> L 4             -Inf      0.000    -Inf  < 2e-16 ***
> U 4            3.912      0.000     Inf  < 2e-16 ***
> L 5            1.609      0.000     Inf  < 2e-16 ***
> U 5            1.609      0.000     Inf  < 2e-16 ***
> L 6            1.609      0.000     Inf  < 2e-16 ***
> U 6            2.996      0.000     Inf  < 2e-16 ***
> L 7            2.996      0.000     Inf  < 2e-16 ***
> U 7            2.996      0.000     Inf  < 2e-16 ***
> L 8            2.996      0.000     Inf  < 2e-16 ***
> U 8            3.912      0.000     Inf  < 2e-16 ***
> L 9            2.996      0.000     Inf  < 2e-16 ***
> U 9              Inf      0.000     Inf  < 2e-16 ***
> L 10           3.912      0.000     Inf  < 2e-16 ***
> U 10           3.912      0.000     Inf  < 2e-16 ***
> L 11           3.912      0.000     Inf  < 2e-16 ***
> U 11           4.605      0.000     Inf  < 2e-16 ***
> L 12           3.912      0.000     Inf  < 2e-16 ***
> U 12             Inf      0.000     Inf  < 2e-16 ***
> L 13           4.605      0.000     Inf  < 2e-16 ***
> U 13           4.605      0.000     Inf  < 2e-16 ***
> L 14           4.605      0.000     Inf  < 2e-16 ***
> U 14           5.521      0.000     Inf  < 2e-16 ***
> L 15           4.605      0.000     Inf  < 2e-16 ***
> U 15             Inf      0.000     Inf  < 2e-16 ***
> L 16           5.521      0.000     Inf  < 2e-16 ***
> U 16           5.521      0.000     Inf  < 2e-16 ***
> L 17           5.521      0.000     Inf  < 2e-16 ***
> U 17             Inf      0.000     Inf  < 2e-16 ***
> sigma          2.736      0.443    6.18  1.5e-08 ***
189,199d191
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
<   longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object,  :
<   number of rows of result is not a multiple of vector length (arg 2)
< 3: In coef/stdErr :
<   longer object length is not a multiple of shorter object length
< 4: In cbind(coef, stdErr, coef/stdErr, rep(NA, length(coef))) :
<   number of rows of result is not a multiple of vector length (arg 2)
< 5: In coef/stdErr :
<   longer object length is not a multiple of shorter object length
300d291
< stdEr.intReg..
309,316c300,307
< (Intercept)        1.908      0.184   10.38  < 2e-16 ***
< factor(educ)2      0.222      0.188    1.18  0.23921    
< factor(educ)3      0.396      0.185    2.15  0.03315 *  
< factor(educ)4      0.490      0.193    2.54  0.01204 *  
< factor(educ)5      0.708      0.188    3.76  0.00022 ***
< poly(exper, 2)1    2.017      0.346    5.83  2.3e-08 ***
< poly(exper, 2)2   -0.872      0.320   -2.73  0.00694 ** 
< sigma              0.258         NA      NA       NA    
---
> (Intercept)       1.9082     0.1839   10.38  < 2e-16 ***
> factor(educ)2     0.2218     0.1879    1.18  0.23921    
> factor(educ)3     0.3964     0.1847    2.15  0.03315 *  
> factor(educ)4     0.4904     0.1934    2.54  0.01204 *  
> factor(educ)5     0.7075     0.1881    3.76  0.00022 ***
> poly(exper, 2)1   2.0167     0.3460    5.83  2.3e-08 ***
> poly(exper, 2)2  -0.8724     0.3197   -2.73  0.00694 ** 
> sigma             0.2582     0.0188   13.71  < 2e-16 ***
320,324d310
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
<   longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object,  :
<   number of rows of result is not a multiple of vector length (arg 2)
376d361
< stdEr.intReg..
386c371
< sigma   0.4371         NA      NA       NA    
---
> sigma   0.4371     0.0376    11.6   <2e-16 ***
397d381
< stdEr.intReg..
407c391
< sigma   0.4373         NA      NA       NA    
---
> sigma   0.4373     0.0377    11.6   <2e-16 ***
420d403
< stdEr.intReg..
429,436c412,419
< (Intercept)        1.921      0.170   11.28  < 2e-16 ***
< factor(educ)2      0.210      0.174    1.21   0.2271    
< factor(educ)3      0.371      0.171    2.17   0.0314 *  
< factor(educ)4      0.480      0.179    2.68   0.0080 ** 
< factor(educ)5      0.694      0.175    3.97   0.0001 ***
< poly(exper, 2)1    1.972      0.334    5.90  1.6e-08 ***
< poly(exper, 2)2   -0.878      0.307   -2.86   0.0047 ** 
< sigma              0.141         NA      NA       NA    
---
> (Intercept)       1.9212     0.1703   11.28  < 2e-16 ***
> factor(educ)2     0.2104     0.1736    1.21   0.2271    
> factor(educ)3     0.3714     0.1714    2.17   0.0314 *  
> factor(educ)4     0.4801     0.1790    2.68   0.0080 ** 
> factor(educ)5     0.6939     0.1748    3.97   0.0001 ***
> poly(exper, 2)1   1.9719     0.3342    5.90  1.6e-08 ***
> poly(exper, 2)2  -0.8784     0.3068   -2.86   0.0047 ** 
> sigma             0.1413     0.0128   11.03  < 2e-16 ***
440,444d422
< Warning messages:
< 1: In coef.maxLik(object)/stdEr.maxLik(object, eigentol = eigentol) :
<   longer object length is not a multiple of shorter object length
< 2: In cbind(Estimate = coef.maxLik(object), `Std. error` = stdEr.maxLik(object,  :
<   number of rows of result is not a multiple of vector length (arg 2)
Warning message:
running command '"diff" -bw "R:\tmp\RtmpUDLA98\Rdiffa13c8107444a4" "R:\tmp\RtmpUDLA98\Rdiffb13c84f174a67"' had status 1 
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

Run time: 41.23 seconds.