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RespChamberProc log file (check_x86_64_linux)

Fri Jun 23 13:46:01 2017: Checking package RespChamberProc (SVN revision 3) ...
* using log directory ‘/mnt/building/build_2017-06-23-13-43/RF_PKG_CHECK/PKGS/RespChamberProc.Rcheck’
* using R version 3.4.1 beta (2017-06-20 r72822)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘RespChamberProc/DESCRIPTION’ ... OK
* this is package ‘RespChamberProc’ version ‘0.6.2’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Thomas Wutzler ’

New submission

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RespChamberProc’ can be installed ... [2s/2s] WARNING
Found the following significant warnings:
  Warning: replacing previous import ‘dplyr::contains’ by ‘purrr::contains’ when loading ‘RespChamberProc’
  Warning: replacing previous import ‘dplyr::order_by’ by ‘purrr::order_by’ when loading ‘RespChamberProc’
See ‘/mnt/building/build_2017-06-23-13-43/RF_PKG_CHECK/PKGS/RespChamberProc.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calcClosedChamberFlux: no visible global function definition for
  ‘quantile’
calcClosedChamberFlux: no visible global function definition for
  ‘capture.output’
calcClosedChamberFlux: no visible global function definition for
  ‘coefficients’
calcClosedChamberFlux: no visible global function definition for
  ‘median’
calcClosedChamberFlux: no visible global function definition for
  ‘residuals’
calcClosedChamberFlux: no visible global function definition for ‘AIC’
calcClosedChamberFlux: no visible global function definition for ‘sd’
calcClosedChamberFlux: no visible global function definition for ‘IQR’
plotCampaignConcSeries: no visible global function definition for ‘pdf’
plotCampaignConcSeries: no visible global function definition for
  ‘dev.off’
plotDurationUncertainty: no visible global function definition for
  ‘plot’
plotDurationUncertainty: no visible global function definition for
  ‘abline’
plotResp: no visible global function definition for ‘plot’
plotResp: no visible global function definition for ‘mtext’
plotResp: no visible global function definition for ‘abline’
plotResp: no visible global function definition for ‘lines’
plotResp: no visible global function definition for ‘legend’
read81x: no visible global function definition for ‘read.table’
read81x : : no visible global function definition for
  ‘read.table’
readDat: no visible global function definition for ‘read.table’
regressFluxExp: no visible global function definition for
  ‘coefficients’
regressFluxExp: no visible global function definition for ‘lm’
regressFluxExp: no visible global function definition for ‘quantile’
regressFluxExp: no visible global function definition for ‘update’
regressFluxExp: no visible global function definition for ‘AIC’
regressFluxExp: no visible global function definition for ‘vcov’
regressFluxExp: no visible global function definition for ‘coef’
regressFluxLinear: no visible global function definition for ‘AIC’
regressFluxLinear: no visible global function definition for ‘lm’
regressFluxLinear: no visible global function definition for ‘coef’
regressFluxLinear: no visible global function definition for ‘vcov’
regressFluxLinear: no visible global function definition for
  ‘coefficients’
regressFluxSquare: no visible global function definition for ‘AIC’
regressFluxSquare: no visible global function definition for
  ‘coefficients’
regressFluxSquare: no visible global function definition for ‘vcov’
regressFluxSquare: no visible global function definition for ‘coef’
regressFluxTanh: no visible global function definition for
  ‘coefficients’
regressFluxTanh: no visible global function definition for ‘lm’
regressFluxTanh: no visible global function definition for ‘quantile’
regressFluxTanh: no visible global function definition for ‘resid’
regressFluxTanh: no visible global function definition for ‘update’
regressFluxTanh: no visible global function definition for ‘AIC’
regressFluxTanh: no visible global function definition for ‘vcov’
regressFluxTanh: no visible global function definition for ‘coef’
selectDataAfterLag: no visible global function definition for ‘tail’
selectDataAfterLag: no visible global function definition for ‘lm’
selectDataAfterLag: no visible global function definition for ‘AIC’
sigmaBootLeverage: no visible global function definition for ‘sd’
sigmaBootLeverage: no visible global function definition for ‘quantile’
Undefined global functions or variables:
  AIC IQR abline capture.output coef coefficients dev.off legend lines
  lm median mtext pdf plot quantile read.table resid residuals sd tail
  update vcov
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "abline", "legend", "lines", "mtext", "plot")
  importFrom("stats", "AIC", "IQR", "coef", "coefficients", "lm",
             "median", "quantile", "resid", "residuals", "sd", "update",
             "vcov")
  importFrom("utils", "capture.output", "read.table", "tail")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'as.POSIXctUTC.Rd':
  \examples lines wider than 100 characters:
     plot(tmp)    # note that it is not converted to local time e.g. CET, but ggplot respects timezone attribute

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [31s/31s] NOTE
Examples with CPU or elapsed time > 5s
                          user system elapsed
sigmaBootLeverage       15.980   0.00  15.981
plotDurationUncertainty  6.896   0.02   6.917
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘doRUnit.R’ [10s/10s]
 [10s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [21s/21s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/mnt/building/build_2017-06-23-13-43/RF_PKG_CHECK/PKGS/RespChamberProc.Rcheck/00check.log’
for details.


Run time: 107.4 seconds.