R Development Page

SNPRelate log file (build_win64)

Sat Sep 13 00:30:15 2014: Building binary for package SNPRelate (SVN revision 6)
using R version 3.1.1 Patched (2014-09-10 r66562) ...

* installing to library 'R:/lib/local/3.1'
* installing *source* package 'SNPRelate' ...
** libs

*** arch - i386
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c CoreGDSLink.cpp -o CoreGDSLink.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
g++ -m32 -shared -s -static-libgcc -o SNPRelate.dll tmp.def CoreGDSLink.o SNPRelate.o dGenGWAS.o dVect.o genIBD.o genIBS.o genLD.o genPCA.o -lgfortran -LR:/lib/R/R-patched/bin/i386 -lRblas -LR:/lib/R/R-patched/bin/i386 -lRlapack -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.1/SNPRelate/libs/i386

*** arch - x64
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c CoreGDSLink.cpp -o CoreGDSLink.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c SNPRelate.cpp -o SNPRelate.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dGenGWAS.cpp -o dGenGWAS.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dVect.cpp -o dVect.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genIBD.cpp -o genIBD.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genIBS.cpp -o genIBS.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genLD.cpp -o genLD.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_NO_MULTICORE    -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c genPCA.cpp -o genPCA.o
g++ -m64 -shared -s -static-libgcc -o SNPRelate.dll tmp.def CoreGDSLink.o SNPRelate.o dGenGWAS.o dVect.o genIBD.o genIBS.o genLD.o genPCA.o -lgfortran -LR:/lib/R/R-patched/bin/x64 -lRblas -LR:/lib/R/R-patched/bin/x64 -lRlapack -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.1/SNPRelate/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'SNPRelate' as SNPRelate_0.9.19.zip
* DONE (SNPRelate)
Run time: 23.69 seconds.