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trajectories log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-09-23-16-09/RF_PKG_CHECK/PKGS/trajectories.Rcheck'
* using R version 3.0.1 Patched (2013-09-13 r63932)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'trajectories/DESCRIPTION' ... OK
* this is package 'trajectories' version '0.0-1'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'edzer pebesma '
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'trajectories' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file found at top level:
  'notes'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'methods' 'rgeos'
  These packages needs to imported from for the case when
  this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
summary.STI: no visible binding for global variable 'sti'
summary,STI: no visible binding for global variable 'sti'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'plot' and siglist 'STI,missing'
  generic 'plot' and siglist 'STTDF,missing'
  generic 'summary' and siglist 'STI'
  generic 'summary' and siglist 'STTDF'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot':
  'plot.STI' 'plot.STTDF'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'STItoSTTDFdemo.R'
  Comparing 'STItoSTTDFdemo.Rout' to 'STItoSTTDFdemo.Rout.save' ...3d2
< > ##Load library
5,6c4,5
< rgeos version: 0.3-1, (SVN revision (unknown))
<  GEOS runtime version: 3.3.2-CAPI-1.7.2 
---
> rgeos version: 0.2-20, (SVN revision (unknown))
>  GEOS runtime version: 3.3.8-CAPI-1.7.8 
9,10c8,15
< > library(spacetime)
< > 
---
> 
> Attaching package: 'trajectories'
> 
> The following object is masked from 'package:stats':
> 
>     aggregate
> 
> > ##Demo
68a74
> > ##There are some extreme values here.. Need to triple check..!
  Running 'STItoSTTDFdemo2.R'
  Comparing 'STItoSTTDFdemo2.Rout' to 'STItoSTTDFdemo2.Rout.save' ...6,7c6,7
< rgeos version: 0.3-1, (SVN revision (unknown))
<  GEOS runtime version: 3.3.2-CAPI-1.7.2 
---
> rgeos version: 0.2-20, (SVN revision (unknown))
>  GEOS runtime version: 3.3.8-CAPI-1.7.8 
  Running 'aggregate_demo.R'
  Comparing 'aggregate_demo.Rout' to 'aggregate_demo.Rout.save' ...6,7c6,7
< rgeos version: 0.3-1, (SVN revision (unknown))
<  GEOS runtime version: 3.3.2-CAPI-1.7.2 
---
> rgeos version: 0.2-20, (SVN revision (unknown))
>  GEOS runtime version: 3.3.8-CAPI-1.7.8 
  Running 'crop_demo.R'
  Running 'summary_and_plot_demo.R'
 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 5 notes.
See
  'R:/run/building/build_2013-09-23-16-09/RF_PKG_CHECK/PKGS/trajectories.Rcheck/00check.log'
for details.

Run time: 85.16 seconds.