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fitob log file (check_x86_64_linux)

Thu Nov 29 00:16:07 2012: Checking package fitob (SVN revision 11) ...
* using log directory ‘/mnt/building/build_2012-11-29-00-05/RF_PKG_CHECK/PKGS/fitob.Rcheck’
* using R version 2.15.2 Patched (2012-11-27 r61172)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘fitob/DESCRIPTION’ ... OK
* this is package ‘fitob’ version ‘1.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Janos Benk ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory ‘src’ contains:
  R_fitob.hpp combigrid.hpp
These are unlikely file names for src files.
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  src/combigrid/.sconsign.dblite
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking whether package ‘fitob’ can be installed ... [286s/290s] OK
* checking installed package size ... NOTE
  installed size is 24.9Mb
  sub-directories of 1Mb or more:
    libs  24.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... WARNING
Empty or missing file ‘demo/00Index’.
See the information on INDEX files and package subdirectories in the
chapter ‘Creating R packages’ of the ‘Writing R Extensions’ manual.
* checking package subdirectories ... WARNING
Subdirectory ‘data’ contains no data sets.
Subdirectory ‘demo’ contains no demos.
Subdirectory ‘src’ contains no source files.
Invalid citation information in ‘inst/CITATION’:
  13:3: unexpected symbol
  12: grids, parallelization"
  13:   textVersion
       ^
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘fitobMeshPlot’ ‘fitobPrice’ ‘fitobPriceMC’ ‘fitobPriceMesh’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... WARNING
Files not of a type allowed in a ‘data’ directory:
  ‘FX.xml’ ‘FX_Script’ ‘GMIB.xml’ ‘GMIB_Script’ ‘Heston2D.xml’
  ‘Heston2D_Script’ ‘american1D.xml’ ‘american1DScript’
  ‘american3D.xml’ ‘american3D_Script’ ‘asian1D.xml’ ‘asian1DScript’
  ‘euro1D.xml’ ‘euro1DScript’
Please use e.g. ‘inst/extdata’ for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File ‘/mnt/building/build_2012-11-29-00-05/RF_PKG_CHECK/PKGS/fitob.Rcheck/fitob/libs/fitob.so’:
  Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
    Objects: ‘combigrid/combischeme/CombiSchemeBasis.o’,
      ‘combigrid/domain/CombiDomain1D.o’,
      ‘src/operators/FitobDaOperator.o’,
      ‘src/operators/FitobThetaOperator.o’,
      ‘src/scripteval/FitobConvergenceAnaly.o’

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 5 warnings.
NOTE: There were 4 notes.
See
  ‘/mnt/building/build_2012-11-29-00-05/RF_PKG_CHECK/PKGS/fitob.Rcheck/00check.log’
for details.

Run time: 349.71 seconds.