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imad log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2012-06-20-00-02/RF_PKG_CHECK/PKGS/imad.Rcheck'
* using R version 2.15.0 Patched (2012-06-11 r59554)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'imad/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'imad' version '0.4-1'
* checking CRAN incoming feasibility ... NOTE
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'imad' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  'ff' 'mmap' 'snowfall'
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Foreign function calls without 'PACKAGE' argument:
.Fortran("dggev", ...)
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... NOTE
calc_hpc : : warning in cellFromRowCol(x, row = tr$row[i],
  col = 1): partial argument match of 'row' to 'rownr'
calc_hpc : : warning in cellFromRowCol(x, row = tr$row[i],
  col = 1): partial argument match of 'col' to 'colnr'
calc_hpc : : warning in cellFromRowCol(x, row = tr$row2[i],
  col = ncol(x)): partial argument match of 'row' to 'rownr'
calc_hpc : : warning in cellFromRowCol(x, row = tr$row2[i],
  col = ncol(x)): partial argument match of 'col' to 'colnr'
calc_hpc: no visible global function definition for 'ff'
calc_hpc: no visible global function definition for 'finalizer<-'
calc_hpc : : no visible global function definition for
  'mmap'
calc_hpc : : no visible global function definition for
  'real64'
calc_hpc : : no visible global function definition for
  'munmap'
calc_hpc: no visible global function definition for 'clusterMap'
cluster_stack_mapply: no visible global function definition for
  'clusterMap'
layerStats_hpc_mean: no visible global function definition for
  'clusterMap'
layerStats_hpc_sum: no visible global function definition for
  'clusterMap'
* checking Rd files ... NOTE
prepare_Rd: iMad_original.Rd:30-33: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'add_leading_zeroes' 'brick_to_stack' 'calc_hpc'
  'cluster_stack_mapply' 'layerStats_hpc' 'layerStats_hpc_mean'
  'layerStats_hpc_sum' 'layerStats_hpc_weighted.cov' 'mask_hpc'
  'raster_to_list' 'setValues_hpc' 'spectral_subset'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'iMad'
  'timing' 'inmemory' 'debug' 'debug_outputs'

Undocumented arguments in documentation object 'iMad_original'
  'verbose' '...'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 4 warnings.
NOTE: There were 3 notes.
See
  'R:/run/building/build_2012-06-20-00-02/RF_PKG_CHECK/PKGS/imad.Rcheck/00check.log'
for details.

Run time: 45.24 seconds.