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Logfile for casper not available.

This package probably failed to build. See the build log for the source package:

Mon Jun 10 12:15:11 2013: Building tarball for package casper (SVN revision 270)
using R version 3.0.1 Patched (2013-06-04 r62868) ...

* checking for file ‘casper/DESCRIPTION’ ... OK
* preparing ‘casper’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:stats’:

    xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
    cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unlist

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    ‘browseVignettes()’. To cite Bioconductor, see
    ‘citation("Biobase")’, and for packages ‘citation("pkgname")’.

Loading required package: IRanges
Loading required package: gtools
Loading required package: GenomicRanges
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: plyr

Attaching package: ‘plyr’

The following object is masked from ‘package:IRanges’:

    compact, desc, rename

Loading required package: gaga
Loading required package: coda
Loading required package: lattice
Loading required package: EBarrays
Loading required package: mgcv
This is mgcv 1.7-24. For overview type ‘help("mgcv-package")’.
Loading required namespace: tcltk

Error: processing vignette ‘casper.Rnw’ failed with diagnostics:
 chunk 7 (label = procBam) 
Error in procBam(bam = bam, stranded = FALSE, seed = as.integer(1), verbose = FALSE,  : 
  error in evaluating the argument ‘rname’ in selecting a method for function ‘procBam’: Error: argument "rname" is missing, with no default

Execution halted
Run time: 84.28 seconds.