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Logfile for rbamtools not available.
This package probably failed to build. See the build log for the source package:
Tue Dec 16 16:25:10 2014: Building tarball for package rbamtools (SVN revision 93)
using R version 3.1.2 Patched (2014-12-15 r67171) ...
* checking for file ‘rbamtools/DESCRIPTION’ ... OK
* preparing ‘rbamtools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘rbamtools’ ...
** libs
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bam.c -o samtools/bam.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bam_aux.c -o samtools/bam_aux.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bam_import.c -o samtools/bam_import.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bam_index.c -o samtools/bam_index.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bam_sort.c -o samtools/bam_sort.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/bgzf.c -o samtools/bgzf.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/faidx.c -o samtools/faidx.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/kstring.c -o samtools/kstring.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/razf.c -o samtools/razf.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/sam.c -o samtools/sam.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c samtools/sam_header.c -o samtools/sam_header.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rbamtools.c -o rbamtools.o
In file included from rbamtools.c:17:0:
rbamtools.h:39:26: fatal error: align_counts.h: No such file or directory
compilation terminated.
make: *** [rbamtools.o] Error 1
gcc -std=gnu99 -I/srv/R/R-patched/build.14-12-16/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rbamtools.c -o rbamtools.o
In file included from rbamtools.c:17:0:
rbamtools.h:39:26: fatal error: align_counts.h: No such file or directory
compilation terminated.
make: *** [rbamtools.o] Error 1
ERROR: compilation failed for package ‘rbamtools’
* removing ‘/tmp/RtmpuFupZR/Rinstd64117535ac/rbamtools’
-----------------------------------
ERROR: package installation failed
Run time: 7.86 seconds.
