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phylobase log file (00install.out)
* installing *source* package ‘phylobase’ ...
** libs
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c GetNCL.cpp -o GetNCL.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c ancestors.c -o ancestors.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c checkPhylo4.cpp -o checkPhylo4.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c descendants.c -o descendants.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsblock.cpp -o nxsblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxscharactersblock.cpp -o nxscharactersblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsdatablock.cpp -o nxsdatablock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsdistancedatum.cpp -o nxsdistancedatum.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsdistancesblock.cpp -o nxsdistancesblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsemptyblock.cpp -o nxsemptyblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsexception.cpp -o nxsexception.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsmultiformat.cpp -o nxsmultiformat.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxspublicblocks.cpp -o nxspublicblocks.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsreader.cpp -o nxsreader.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxssetreader.cpp -o nxssetreader.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsstring.cpp -o nxsstring.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxstaxablock.cpp -o nxstaxablock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxstoken.cpp -o nxstoken.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxstreesblock.cpp -o nxstreesblock.o
g++ -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c nxsunalignedblock.cpp -o nxsunalignedblock.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c phyloXX.c -o phyloXX.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c reorderBinary.c -o reorderBinary.o
gcc -std=gnu99 -I/srv/R/R-patched/build.14-05-08/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I/usr/local/include -I"/home/rforge/lib/R/3.1/Rcpp/include" -fpic -g -O2 -c reorderRobust.c -o reorderRobust.o
g++ -shared -L/usr/local/lib -o phylobase.so GetNCL.o RcppExports.o ancestors.o checkPhylo4.o descendants.o nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancedatum.o nxsdistancesblock.o nxsemptyblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o phyloXX.o reorderBinary.o reorderRobust.o -L/srv/R/R-patched/build.14-05-08/lib -lR
installing to /mnt/building/build_2014-05-08-18-10/RF_PKG_CHECK/PKGS/phylobase.Rcheck/phylobase/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘edges’ in package ‘phylobase’
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘phylobase’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (phylobase)
