R Development Page
Contributed R Packages
Below is a list of all packages provided by project Evolutionary models in R.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
| indorigin | Testing independent origins hypothesis using Bayes factors | |||||||||
| To fill later | ||||||||||
| Version: 0.0.1 | Last change: 2015-07-31 21:02:46+02 | Rev.: 126 | ||||||||||
Download:
 (.tar.gz) |
 (.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("indorigin", repos="http://R-Forge.R-project.org") | ||||||||||
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| phyloRcppExamples | Examples of phylogenetic computations with Rcpp | |||||||||
| Provides examples of using Rcpp and RcppArmadillo for phylogenetic inference and comparative biology. | ||||||||||
| Version: 1.0 | Last change: 2012-08-16 20:59:21+02 | Rev.: 5 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("phyloRcppExamples", repos="http://R-Forge.R-project.org") | ||||||||||
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| rbrothers | rbrothers: multiple change-point recombination detection | |||||||||
| rbrothers is a phylogenetic recombination detection package. Starting with aligned DNA sequences, rbrothers uses the Bayesian multiple change-point model implemented in the JAVA package DualBrothers to create posterior tree probability plots. rbrothers automates the production of a reasonable set of candidate trees and provides trace plots and autocorrelation plots that allow the user to monitor the convergence and mixing of the Markov chain Monte Carlo algorithm. | ||||||||||
| Version: 0.0-1 | Last change: 2015-07-31 21:02:46+02 | Rev.: 126 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("rbrothers", repos="http://R-Forge.R-project.org") | ||||||||||
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| robustDist | Calculation of labeled molecular distances robust to certain model misspecification | |||||||||
| Analysis of continuous-time Markov chain counting processes | ||||||||||
| Version: 1.0 | Last change: 2013-07-17 23:44:52+02 | Rev.: 57 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("robustDist", repos="http://R-Forge.R-project.org") | ||||||||||
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| synDss | Recombination detection using synonymous distances | |||||||||
| Based on the sliding windows methods of TOPALi, this package allows for detection of recombination using synonymous distnaces, which avoids false positives due to localized convergent evolution | ||||||||||
| Version: 0.0-1 | Last change: 2013-12-12 23:18:52+01 | Rev.: 124 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("synDss", repos="http://R-Forge.R-project.org") | ||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.
