R Development Page

AFLP log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2014-04-23-16-12/RF_PKG_CHECK/PKGS/AFLP.Rcheck'
* using R version 3.1.0 Patched (2014-04-20 r65427)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'AFLP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AFLP' version '0.4.0-71'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Thierry Onkelinx '
New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AFLP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'ggplot2:::digest.ggplot'
  See the note in ?`:::` about the use of this operator.
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... WARNING
  'gs+qpdf' made some significant size reductions:
     compacted 'AFLP.pdf' from 988Kb to 476Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
repeatability 23.56   0.00   23.56
classify      10.43   0.01   10.44
addOutliers    6.76   0.51    7.36
normalise      5.40   0.30    5.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'AFLP.Rnw' using 'UTF-8' ... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  'R:/run/building/build_2014-04-23-16-12/RF_PKG_CHECK/PKGS/AFLP.Rcheck/00check.log'
for details.

Run time: 294.12 seconds.