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sp log file (check_x86_64_linux)

Thu Aug 18 16:13:03 2016: Checking package sp (SVN revision 1728) ...
* using log directory ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/sp.Rcheck’
* using R version 3.3.1 Patched (2016-08-17 r71112)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘sp/DESCRIPTION’ ... OK
* this is package ‘sp’ version ‘1.2-2’
* checking CRAN incoming feasibility ... WARNING
Maintainer: ‘Edzer Pebesma ’

Insufficient package version (submitted: 1.2.2, existing: 1.2.3)

Found the following (possibly) invalid URLs:
  URL: http://www.abecedarical.com/javascript/script_greatcircle.html
    From: man/spDistsN1.Rd
    Status: Error
    Message: libcurl error code 6
    	Could not resolve host: www.abecedarical.com

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sp’ can be installed ... [5s/6s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘sp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gridded-methods
> ### Title: specify spatial data as being gridded, or find out whether they
> ###   are
> ### Aliases: gridded-methods gridparameters fullgrid
> ###   fullgrid,Spatial-method gridded gridded,Spatial-method fullgrid<-
> ###   gridded<- fullgrid<-,Spatial,ANY-method
> ###   fullgrid<-,SpatialGrid,logical-method
> ###   fullgrid<-,SpatialGridDataFrame,logical-method
> ###   fullgrid<-,SpatialPixels,logical-method
> ###   fullgrid<-,SpatialPixelsDataFrame,logical-method
> ###   gridded<-,SpatialGrid,logical-method
> ###   gridded<-,SpatialGridDataFrame,logical-method
> ###   gridded<-,SpatialPixels,logical-method
> ###   gridded<-,SpatialPixelsDataFrame,logical-method
> ###   gridded<-,SpatialPoints,list-method
> ###   gridded<-,SpatialPoints,logical-method
> ###   gridded<-,SpatialPointsDataFrame,list-method
> ###   gridded<-,SpatialPointsDataFrame,logical-method
> ###   gridded<-,data.frame,GridTopology-method
> ###   gridded<-,data.frame,character-method
> ###   gridded<-,data.frame,formula-method
> ### Keywords: methods spatial
> 
> ### ** Examples
> 
> # just 9 points on a grid:
> x <- c(1,1,1,2,2,2,3,3,3)
> y <- c(1,2,3,1,2,3,1,2,3)
> xy <- cbind(x,y)
> S <- SpatialPoints(xy)
> class(S)
[1] "SpatialPoints"
attr(,"package")
[1] "sp"
> plot(S)
> gridded(S) <- TRUE
> gridded(S)
[1] TRUE
> class(S)
[1] "SpatialPixels"
attr(,"package")
[1] "sp"
> summary(S)
Object of class SpatialPixels
Coordinates:
  min max
x 0.5 3.5
y 0.5 3.5
Is projected: NA 
proj4string : [NA]
Number of points: 9
Grid attributes:
  cellcentre.offset cellsize cells.dim
x                 1        1         3
y                 1        1         3
> plot(S)
> gridded(S) <- FALSE
> gridded(S)
[1] FALSE
> class(S)
[1] "SpatialPoints"
attr(,"package")
[1] "sp"
> 
> # data.frame
> data(meuse.grid)
> coordinates(meuse.grid) <- ~x+y
> gridded(meuse.grid) <- TRUE
> plot(meuse.grid) # not much good
Error in plot(meuse.grid) : 
  could not find function "plot.SpatialGridDataFrame"
Calls: plot -> plot
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘agg.R’
  Comparing ‘agg.Rout’ to ‘agg.Rout.save’ ... OK
  Running ‘base.R’
  Comparing ‘base.Rout’ to ‘base.Rout.save’ ... OK
  Running ‘fail1.R’
  Comparing ‘fail1.Rout’ to ‘fail1.Rout.save’ ... OK
  Running ‘grid.R’
  Comparing ‘grid.Rout’ to ‘grid.Rout.save’ ... OK
  Running ‘over2.R’
  Comparing ‘over2.Rout’ to ‘over2.Rout.save’ ... OK
  Running ‘pass1.R’
  Comparing ‘pass1.Rout’ to ‘pass1.Rout.save’ ...280c280
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
315c315
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
338c338
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
361c361
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
385c385
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
407c407
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
425c425
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
445c445
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
467c467
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
485c485
< +towgs84=565.417,50.3319,465.552,-0.398957,0.343988,-1.8774,4.0725
---
> +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725
  Running ‘point.in.polygon.R’
  Comparing ‘point.in.polygon.Rout’ to ‘point.in.polygon.Rout.save’ ... OK
  Running ‘sel.R’
  Comparing ‘sel.Rout’ to ‘sel.Rout.save’ ... OK
  Running ‘sp1.R’
  Comparing ‘sp1.Rout’ to ‘sp1.Rout.save’ ... OK
  Running ‘spDists.R’
  Comparing ‘spDists.Rout’ to ‘spDists.Rout.save’ ... OK
  Running ‘spplot.R’
  Comparing ‘spplot.Rout’ to ‘spplot.Rout.save’ ... OK
  Running ‘zerodist.R’
  Comparing ‘zerodist.Rout’ to ‘zerodist.Rout.save’ ... OK
 [12s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [15s/17s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING
See
  ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/sp.Rcheck/00check.log’
for details.

Run time: 117.72 seconds.