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SpatialEpiR log file (00install.out)

* installing *source* package ‘SpatialEpiR’ ...
** libs
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c allofree.c -o allofree.o
gfortran   -fpic  -g -O2  -c cncvwt.f -o cncvwt.o
gfortran   -fpic  -g -O2  -c cvker2d.f -o cvker2d.o
gfortran   -fpic  -g -O2  -c edhatk.f -o edhatk.o
edhatk.f:30.17:

              do p=1,k-1                                                
                 1
Warning: Deleted feature: Loop variable at (1) must be integer
edhatk.f:63.17:

              do p=1,k-1                                                
                 1
Warning: Deleted feature: Loop variable at (1) must be integer
gfortran   -fpic  -g -O2  -c imp.f -o imp.o
gfortran   -fpic  -g -O2  -c ipippa.f -o ipippa.o
gfortran   -fpic  -g -O2  -c iplace.f -o iplace.o
gfortran   -fpic  -g -O2  -c kdesr10.f -o kdesr10.o
gfortran   -fpic  -g -O2  -c kdesr2.f -o kdesr2.o
gfortran   -fpic  -g -O2  -c kdesr3.f -o kdesr3.o
gfortran   -fpic  -g -O2  -c kdesr5.f -o kdesr5.o
gfortran   -fpic  -g -O2  -c kdesr6.f -o kdesr6.o
gfortran   -fpic  -g -O2  -c kdesr7.f -o kdesr7.o
gfortran   -fpic  -g -O2  -c kdesr8.f -o kdesr8.o
gfortran   -fpic  -g -O2  -c kdesr9.f -o kdesr9.o
gfortran   -fpic  -g -O2  -c ker2d.f -o ker2d.o
gfortran   -fpic  -g -O2  -c ker2dg.f -o ker2dg.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c keredgecor.c -o keredgecor.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c matfunc.c -o matfunc.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c newt.c -o newt.o
gfortran   -fpic  -g -O2  -c plarea.f -o plarea.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c randomgen.c -o randomgen.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rands.c -o rands.o
rands.c:4:1: warning: return type defaults to ‘int’ [enabled by default]
rands.c:10:1: warning: return type defaults to ‘int’ [enabled by default]
rands.c:16:1: warning: return type defaults to ‘int’ [enabled by default]
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smaccalc.c -o smaccalc.o
gcc -std=gnu99 -I/srv/R/R-patched/build.13-02-14/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c smaccsample.c -o smaccsample.o
gfortran   -fpic  -g -O2  -c sort2.f -o sort2.o
gfortran   -fpic  -g -O2  -c var2.f -o var2.o
gfortran   -fpic  -g -O2  -c var3.f -o var3.o
gfortran   -fpic  -g -O2  -c weight.f -o weight.o
gcc -std=gnu99 -shared -L/usr/local/lib -o SpatialEpiR.so allofree.o cncvwt.o cvker2d.o edhatk.o imp.o ipippa.o iplace.o kdesr10.o kdesr2.o kdesr3.o kdesr5.o kdesr6.o kdesr7.o kdesr8.o kdesr9.o ker2d.o ker2dg.o keredgecor.o matfunc.o newt.o plarea.o randomgen.o rands.o smaccalc.o smaccsample.o sort2.o var2.o var3.o weight.o -lgfortran -lm -lquadmath -L/srv/R/R-patched/build.13-02-14/lib -lR
installing to /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/SpatialEpiR/libs
** R
** inst
** preparing package for lazy loading
** help
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:41: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:42: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:43: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:44: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:45: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:46: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:49: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:51: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:52: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:53: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:55: unknown macro '\item'
Warning: /mnt/building/build_2013-02-15-08-50/RF_PKG_CHECK/PKGS/SpatialEpiR.Rcheck/00_pkg_src/SpatialEpiR/man/siggam.Rd:56: unknown macro '\item'
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
running .First.lib() for package ‘SpatialEpiR’ as .onLoad/.onAttach were not found

SPatialEpiR alpha-test version

* DONE (SpatialEpiR)